matlab-based image segmentation procedure Search Results


software-based semi-automatic tracking method  (MathWorks Inc)
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MathWorks Inc software-based semi-automatic tracking method
Software Based Semi Automatic Tracking Method, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pixel-based segmentation method growing region algorithm implemented in matlab software  (MathWorks Inc)
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MathWorks Inc pixel-based segmentation method growing region algorithm implemented in matlab software
Pixel Based Segmentation Method Growing Region Algorithm Implemented In Matlab Software, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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imsegkmeans  (MathWorks Inc)
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MathWorks Inc imsegkmeans
Imsegkmeans, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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custom roi-based matlab application  (MathWorks Inc)
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MathWorks Inc custom roi-based matlab application
Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our <t>MATLAB</t> script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.
Custom Roi Based Matlab Application, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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custom roi-based matlab application - by Bioz Stars, 2026-04
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image processing toolbox  (MathWorks Inc)
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MathWorks Inc image processing toolbox
Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our <t>MATLAB</t> script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.
Image Processing Toolbox, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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image processing toolbox - by Bioz Stars, 2026-04
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matlab-based image segmentation tool  (MathWorks Inc)
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MathWorks Inc matlab-based image segmentation tool
Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our <t>MATLAB</t> script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.
Matlab Based Image Segmentation Tool, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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k-means  (MathWorks Inc)
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MathWorks Inc k-means
Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our <t>MATLAB</t> script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.
K Means, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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b-spline image registration tool  (MathWorks Inc)
90
MathWorks Inc b-spline image registration tool
Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our <t>MATLAB</t> script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.
B Spline Image Registration Tool, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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get_totals matlab function  (MathWorks Inc)
90
MathWorks Inc get_totals matlab function
Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our <t>MATLAB</t> script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.
Get Totals Matlab Function, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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intensity-based image registration  (MathWorks Inc)
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MathWorks Inc intensity-based image registration
Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our <t>MATLAB</t> script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.
Intensity Based Image Registration, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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simpoly  (MathWorks Inc)
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MathWorks Inc simpoly
Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our <t>MATLAB</t> script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.
Simpoly, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our MATLAB script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.

Journal: bioRxiv

Article Title: Protein-lipid interactions drive presynaptic assembly upstream of cell adhesion molecules

doi: 10.1101/2023.11.17.567618

Figure Lengend Snippet: Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our MATLAB script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.

Article Snippet: Fluorescent puncta in the 32-bit linescan tifs were detected and segmented using a custom ROI-based MATLAB application (Image Processing Toolbox Release 2022a, The MathWorks, Inc.) that uses local means thresholding and ROI watershed segmentation followed by parametric restriction to remove noise pixels.

Techniques: Marker